miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|53696901|gb|CV472125.1|CV472125 CCGATTTGCATGTCACTATGACCCTTACGGCCCAATCTACAACAACCGTGAGAGGCTACAGATCTTCGTTTCTGATGCTG
GAGTTCTCGGAGTTTGTTATCTGCTATACCGTATTGCCTTAGTGAAAGGTCTAGCTTGGCTAGTGTGCATCTACGGTGTA
CCCCTCCTCGTCGTGAACGGCTTCCTTGTCTTGATCACCTACTTGCAGCACACTCACCCATCATTGCCACACTACGATTC
AACCGAGTGGGATTGGCTTAGGGGAGCTTTGGCAACCTGTGACAGAGACTATGGGGTTCTAAACAAGGTCTTCCACAACA
TCACCGACACTCACGTGGTGCACCATCTGTTCTCAACCATGCCACACTACAACGCGATGGAGGCAACCAAAGCAGTCAAG
CCACTACTCGGAGACTACTACCAATTCGATGGAACCCCGATTTTCAAGGCAATGTGGAGGGAAGCTAAAGAGTGTCTCTA
CGTCGAGAAAGACGAATCATCTCAAGGCAAAGGTGTCTTCTGGTACAAAAACAAGCTCTGAAATACTAGAACAGAAACTC
AGCTTGCTTTGAATTGGTCTTTTGGTAATGTTTGGTCAGTGTCTTGAGTAAGTATTTCGGATTTAAGTTAATTTAGCTAA
TGTGTTGTCTTTGTCAGTAAGGCGAAGGTTATGTCTGATGAAATTTTTGATCAATAAACGGAAAATTTTAGAACATATAA
GAGGATTAAGTGCGTCTCCACTCTCTAATTGTATGACTACAGTTTATATCAGTGGG




Most similar to sp|P48631|FD6E2_SOYBN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P48631|FD6E2_SOYBN Omega-6 fatty acid desaturase, endoplasmic
           reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1
          Length = 383

 Score =  327 bits (839), Expect = 4e-89
 Identities = 143/179 (79%), Positives = 166/179 (92%)
 Frame = +2

Query: 2   RFACHYDPYGPIYNNRERLQIFVSDAGVLGVCYLLYRIALVKGLAWLVCIYGVPLLVVNG 181
           RFACHYDPYGPIY++RERLQI++SDAGVL V Y L+R+A+ KGLAW+VC+YGVPLLVVNG
Sbjct: 205 RFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNG 264

Query: 182 FLVLITYLQHTHPSLPHYDSTEWDWLRGALATCDRDYGVLNKVFHNITDTHVVHHLFSTM 361
           FLVLIT+LQHTHP+LPHY S+EWDWLRGALAT DRDYG+LNKVFHNITDTHV HHLFSTM
Sbjct: 265 FLVLITFLQHTHPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTM 324

Query: 362 PHYNAMEATKAVKPLLGDYYQFDGTPIFKAMWREAKECLYVEKDESSQGKGVFWYKNKL 538
           PHY+AMEATKA+KP+LG+YY+FD TP  KAMWREA+EC+YVE D+S++ KGVFWY NKL
Sbjct: 325 PHYHAMEATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDQSTESKGVFWYNNKL 383